The only thing I can think of is a Commander's Ability that lets you see where every enemy unit is on the map. Implement it like the satellite scan and call it "Hacking enemy comms network" or something. Meh.
How about another one where theres a place in the ship's main reactor where a boarder could hack into it and make it go critical!
[Curses the idiots in charge of Rogue Squadron II and III]
"Critical" when discussing a reactor does not refer to the reactor overheating or deciding to blow itself up. That is called a "meltdown". In essence, you can take a reactor critical, and this is quite often done, as it's the process of turning it on. So obviously, Rogue Squadron's ships aren't powered by nuclear power - whenever the Imperials activate their reactors, they tend to... explode
. They also have an odd way of activating the things - it seems to be possible only through damaging the vessel.
Wiki
OK, enough RS teasing... for now.
"One of the bitches actually gave birth while she was attacking, and her puppies joined in on the carnage."
--the awesomeness that is Boatmurdered.