I've got things working correctly, but by default this and the extras running should not be there. For gameserver admins that do not have remote desktop access to their servers ( due to them having ranked servers BF2, BF2142, ETQW, etc. ) I have to make manual changes to their server in order for them to run a first strike server without the extra stuff running causing problems. The mod is one of the best there is for 2142, but these extras are killing it performance wise for those running the game in a dedicated server environment.
Server side nothing should need to be modified (except a command line or configuration files if needed) to run 2142 mods except for copying required files from the default directory to the mod directory if needed.